Package index • gdm

All functions

calculate.gdm.deviance(): Calculate GDM Deviance for Observed & Predicted Dissimilarities

formatsitepair(): Combines Biological and Environmental Data to Produce a GDM-formatted Site-Pair Table

gdm-package: Overview of the functions in the gdm package

gdm(): Fit a Generalized Dissimilarity Model to Tabular Site-Pair Data

gdm.crossvalidation(): Cross-Validation Assessment of a Fitted GDM

gdm.partition.deviance(): Perform Deviance Partitioning of a Fitted GDM

gdm.transform(): Transform Environmental Data Using a Fitted Generalized Dissimilarity Model

gdm.varImp(): Assess Predictor Importance and Quantify Model Significance in a Fitted Generalized Dissimilarity Model.

gdmDissim: An example biological dissimilarity matrix

isplineExtract(): Extract I-spline Values From a Fitted Generalized Dissimilarity Model.

plot(<gdm>): Plot Model Fit and I-splines from a Fitted Generalized Dissimilarity Model.

plotUncertainty(): Plot I-splines With Error Bands Using Bootstrapping.

predict(<gdm>): Predict Biological Dissimilarities Between Sites or Times Using a Fitted Generalized Dissimilarity Model

southwest: Species and Environmental Data from Southwestern Australia.

subsample.sitepair(): Remove Sites at Random from a Site-Pair Table

summary(<gdm>): Summarize a Fitted Generalized Dissimilarity Model